PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000052.1_g00001.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 144aa    MW: 15869.8 Da    PI: 7.9184
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000052.1_g00001.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.2e-191061155
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                             s y GVr ++ +g+++AeIrd + ng  kr++lg+f +ae+Aa a+++a+++++g
  Itr_sc000052.1_g00001.1 10 SNYIGVRKRP-WGKYAAEIRDSTRNG--KRVWLGTFNSAEDAALAYDQAALAMRG 61
                             5699******.**********44465..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.22E-231071IPR016177DNA-binding domain
CDDcd000181.70E-281070No hitNo description
Gene3DG3DSA:3.30.730.109.3E-311170IPR001471AP2/ERF domain
PfamPF008477.6E-141161IPR001471AP2/ERF domain
PROSITE profilePS5103221.9181169IPR001471AP2/ERF domain
SMARTSM003803.2E-351175IPR001471AP2/ERF domain
PRINTSPR003673.5E-91223IPR001471AP2/ERF domain
PRINTSPR003673.5E-93551IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MEKDTSGKAS NYIGVRKRPW GKYAAEIRDS TRNGKRVWLG TFNSAEDAAL AYDQAALAMR  60
GTSACLNFPA ELVRKSLEEL DCKEGTSMAA ALKEKHKKRT RRGKGNSPSC EKEEERNNGV  120
LVFEDLGSDL LDELLSETSS SSCM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-27869263ATERF1
3gcc_A1e-27869263ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009609581.13e-58PREDICTED: ethylene-responsive transcription factor 1B-like
RefseqXP_016507098.13e-58PREDICTED: ethylene-responsive transcription factor 1B-like
SwissprotQ8LDC87e-43ERF92_ARATH; Ethylene-responsive transcription factor 1B
TrEMBLM1B0S32e-54M1B0S3_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000344894e-54(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.11e-27ethylene response factor 1